Tools

Tools

Through its partners, the platform offers a comprehensive set of software tools and web services:

  • BLUR: Proteome-wide detection of differential conservation patterns at the protein and subprotein levels.
  • ID-mapping: Mirror service for converting bioinformatics identifiers.
  • LEON-BIS: Tool for evaluating homologous relationships in multiple sequence alignments.
  • Macsims: Information management system based on multiple sequence alignment for annotating protein families.
  • Ordalie Interactive tool for editing and analyzing multiple sequence alignments.
  • OrthoInspector Portal for OrthoInspector, a software tool for inferring orthology relationships, and its associated public databases.
  • PipeAlign: Workflow for creating multiple sequence alignments.
  • PROBE: Tool for analyzing and visualizing protein evolution at the block level.
  • RASCAL: Tool for rapid correction of multiple sequence alignments.
  • SIBIS: Sequence prediction error detector using a Bayesian inference system.
  • shinytRNA:  An interactive web application to explore nuclear tRNA gene organization in plant organisms.

  • Spliceator: Deep learning-based splice site prediction tool.